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Tests and Coverage

25 June, 2025 07:48:06

Source: vignettes/tests_and_coverage.Rmd
tests_and_coverage.Rmd

This output is created by covrpage.

Coverage

Coverage summary is created using the covr package.

⚠️ Not All Tests Passed
  Coverage statistics are approximations of the non-failing tests.
  Use with caution

 For further investigation check in testthat summary tables.
Object Coverage (%)
nif 73.58
R/nif_debugger.R 0.00
R/nif_nca_new.R 0.00
R/nif_viewer.R 0.00
R/sdtm_synthesis.R 17.51
R/nif_nca.R 35.09
R/ggplot_extension.R 43.24
R/physiological_calculations.R 87.21
R/nif_observations.R 88.39
R/make_nif.R 89.66
R/sdtm_class.R 90.91
R/nif_class.R 91.05
R/sdtm_exploration.R 92.58
R/nif_write.R 92.86
R/nif_ensure.R 93.22
R/nif_exploration.R 94.21
R/nif_plot.R 94.44
R/sdtm_mappings.R 95.07
R/nif_load.R 95.28
R/utilities.R 95.48
R/nif_administrations.R 96.12
R/nif_imputations.R 96.51
R/nif_options.R 96.55
R/nif_ae.R 96.72
R/nif_subjects.R 98.55
R/nif_covariates.R 99.12
R/sdtm_analytics.R 100.00
R/sdtm_load.R 100.00


Unit Tests

Unit Test summary is created using the testthat package.

file n time error failed skipped warning icon
test-add_ae_observation.R 18 0.707 0 0 0 0
test-add_analyte_mapping.R 41 0.102 0 0 0 0
test-add_baseline.R 28 0.140 0 0 0 0
test-add_cfb.R 53 0.227 0 0 0 0
test-add_covariate.R 19 0.140 0 0 0 0
test-add_metabolite_mapping.R 27 0.062 0 0 0 0
test-add_observations.R 24 3.035 0 0 0 0
test-add_parent_mapping.R 26 0.063 0 0 0 0
test-add_tad.R 12 0.057 0 0 0 0
test-add_tafd.R 27 0.129 0 0 0 0
test-ae_summary.R 24 0.067 0 0 0 0
test-calculate_bmi.R 15 0.023 0 0 0 0
test-df_to_string.R 13 0.022 0 0 0 0
test-domain.R 16 0.049 0 0 0 0
test-edish_plot.R 6 0.106 0 0 0 0
test-ensure_analyte.R 17 0.034 0 0 0 0
test-ensure_dose.R 12 0.049 0 0 0 0
test-ensure_parent.R 11 0.029 0 0 0 0
test-ensure_tad.R 15 0.073 0 0 0 0
test-ensure_tafd.R 18 0.084 0 0 0 0
test-ensure_time.R 22 0.099 0 0 0 0
test-find_duplicates.R 19 0.042 0 0 0 0
test-ggplot_extension.R 1 0.002 0 0 0 0
test-guess_ntime.R 14 0.032 0 0 0 0
test-guess_parent.R 11 0.045 0 0 0 0
test-guess_pcspec.R 15 0.040 0 0 0 0
test-has_domain.R 25 0.043 0 0 0 0
test-import_from_connection.R 35 0.072 0 0 0 0
test-import_nif.R 25 0.049 0 0 0 0
test-import_observation.R 31 0.248 0 0 0 0
test-imputations.R 5 0.146 0 5 0 0 🛑
test-impute_exendtc_to_cutoff.R 0 0.005 1 0 0 0
test-impute_exendtc_to_rfendtc.R 5 0.052 5 0 0 0
test-impute_missing_exendtc.R 13 0.104 2 0 0 0
test-lbm_boer.R 26 0.039 0 0 0 0
test-lbm_hume.R 19 0.025 0 0 0 0
test-lbm_peters.R 17 0.018 0 0 0 0
test-make_administration.R 6 0.332 0 0 0 0
test-make_ae.R 19 0.142 0 0 0 0
test-make_nif.R 25 0.903 0 0 0 0
test-make_ntime.R 16 0.047 0 0 0 0
test-make_observation.R 35 0.483 0 0 0 0
test-make_subjects_sdtm.R 14 0.040 0 0 0 0
test-nca_from_pp.R 15 0.051 0 0 0 0
test-nca.R 15 0.345 0 0 0 0
test-nif_add_baseline.R 1 0.002 0 0 0 0
test-nif_administrations.R 16 0.085 0 0 0 0
test-nif_class.R 59 0.603 0 0 0 0
test-nif_exploration.R 24 0.424 0 0 0 0
test-nif_load.R 13 0.020 0 0 0 0
test-nif_nca.R 2 0.005 0 0 0 0
test-nif_options.R 9 0.016 0 0 0 0
test-nif_plot.R 15 0.430 0 0 0 0
test-nif_subjects.R 60 0.246 0 0 0 0
test-physiological_calculations.R 51 0.088 0 0 0 0
test-resolve-duplicates.R 26 0.046 0 0 0 0
test-sdtm_analytics.R 1 0.003 0 0 0 0
test-sdtm_class.R 28 0.083 0 0 0 0
test-sdtm_exploration.R 38 0.607 0 0 0 0
test-sdtm_load.R 21 0.060 0 0 0 0
test-sdtm_synthesis.R 2 0.453 0 0 0 0
test-summary-nif.R 49 0.623 0 0 0 0
test-summary-sdtm.R 46 0.086 0 0 0 0
test-utilities.R 100 0.146 0 0 0 0
test-validate_domain.R 16 0.066 0 0 0 0
test-validate_sdtm.R 4 0.012 0 0 0 0
test-viewer.R 1 0.001 0 0 0 0
test-write_nif.R 11 0.036 0 0 0 0
Show Detailed Test Results
file context test status n time icon
test-add_ae_observation.R add_ae_observation add_ae_observation handles basic case correctly PASS 6 0.140
test-add_ae_observation.R add_ae_observation add_ae_observation handles different ae_fields correctly PASS 2 0.138
test-add_ae_observation.R add_ae_observation add_ae_observation handles filters correctly PASS 3 0.132
test-add_ae_observation.R add_ae_observation add_ae_observation handles debug mode correctly PASS 3 0.095
test-add_ae_observation.R add_ae_observation add_ae_observation handles keep parameter correctly PASS 2 0.107
test-add_ae_observation.R add_ae_observation add_ae_observation handles automatic parent and cmt assignment PASS 2 0.095
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping adds correct mapping PASS 5 0.006
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping uses custom analyte name when provided PASS 1 0.002
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping enforces unique EXTRT PASS 2 0.005
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping can add multiple mappings with different EXTRT PASS 8 0.009
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping prevents updating existing EXTRT mappings PASS 2 0.006
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping validates input correctly PASS 5 0.030
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping handles vector inputs with warnings PASS 6 0.015
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping rejects NA values PASS 3 0.011
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping validates analyte parameter PASS 2 0.008
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping initializes analyte_mapping when NULL PASS 4 0.006
test-add_analyte_mapping.R add_analyte_mapping add_analyte_mapping properly trims whitespace PASS 3 0.004
test-add_baseline.R add_baseline add_baseline adds baseline covariate correctly PASS 4 0.012
test-add_baseline.R add_baseline add_baseline handles custom baseline filter PASS 2 0.010
test-add_baseline.R add_baseline add_baseline handles coding table correctly PASS 2 0.009
test-add_baseline.R add_baseline add_baseline validates inputs correctly PASS 4 0.015
test-add_baseline.R add_baseline add_baseline handles multiple baseline values correctly PASS 2 0.017
test-add_baseline.R add_baseline add_baseline handles empty result after filtering PASS 1 0.007
test-add_baseline.R add_baseline add baseline hepatic function class works PASS 2 0.018
test-add_baseline.R add_baseline add_baseline handles all NA baseline values correctly PASS 1 0.009
test-add_baseline.R add_baseline add_baseline warns when some baseline values are NA PASS 4 0.013
test-add_baseline.R add_baseline add_baseline validates required fields correctly PASS 2 0.008
test-add_baseline.R add_baseline add_baseline name parameter works correctly PASS 4 0.022
test-add_cfb.R add_cfb add_cfb works with valid input PASS 5 0.059
test-add_cfb.R add_cfb add_cfb correctly handles baseline calculation with time ≤ 0 PASS 10 0.052
test-add_cfb.R add_cfb add_cfb handles NA values in grouping columns PASS 3 0.015
test-add_cfb.R add_cfb add_cfb works with different summary functions PASS 3 0.014
test-add_cfb.R add_cfb add_cfb works with custom baseline filter PASS 1 0.008
test-add_cfb.R add_cfb add_cfb handles missing required columns PASS 2 0.010
test-add_cfb.R add_cfb add_cfb handles non-numeric columns PASS 2 0.010
test-add_cfb.R add_cfb add_cfb correctly handles complex baseline filters PASS 10 0.015
test-add_cfb.R add_cfb add_cfb correctly handles empty baseline sets PASS 2 0.008
test-add_cfb.R add_cfb add_cfb correctly handles baseline filter with missing values PASS 8 0.015
test-add_cfb.R add_cfb add_cfb correctly handles baseline filter with character columns PASS 7 0.021
test-add_covariate.R add_covariate add_covariate works with valid inputs PASS 9 0.031
test-add_covariate.R add_covariate add_covariate validates nif object PASS 1 0.006
test-add_covariate.R add_covariate add_covariate validates sdtm is provided PASS 1 0.007
test-add_covariate.R add_covariate add_covariate validates domain exists PASS 1 0.006
test-add_covariate.R add_covariate add_covariate validates required fields exist PASS 1 0.007
test-add_covariate.R add_covariate add_covariate validates testcd exists PASS 1 0.007
test-add_covariate.R add_covariate add_covariate validates matching subjects exist PASS 1 0.007
test-add_covariate.R add_covariate add_covariate casts error if no data after filtering PASS 1 0.008
test-add_covariate.R add_covariate add_covariate works with custom field names PASS 1 0.016
test-add_covariate.R add_covariate add_covariate handles duplicated observations correctly PASS 1 0.018
test-add_covariate.R add_covariate add_covariate uses default covariate name if not specified PASS 1 0.027
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping adds correct mapping PASS 4 0.006
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping can add multiple mappings PASS 6 0.008
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping prevents duplicate mappings PASS 1 0.005
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping validates input correctly PASS 5 0.017
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping handles vector inputs with warnings PASS 4 0.011
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping rejects NA values PASS 2 0.007
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping initializes metabolite_mapping when NULL PASS 3 0.004
test-add_metabolite_mapping.R add_metabolite_mapping add_metabolite_mapping properly trims whitespace PASS 2 0.004
test-add_observations.R add_observations add_observation warns about duplicate compartment PASS 1 0.174
test-add_observations.R add_observations add_observation auto-assigns compartment if not specified PASS 2 0.171
test-add_observations.R add_observations add_observation auto-assigns parent if not specified PASS 1 0.160
test-add_observations.R add_observations add_observation properly uses observation_filter PASS 1 0.134
test-add_observations.R add_observations add_observation works with factor parameter PASS 1 0.226
test-add_observations.R add_observations add_observation handles metabolites correctly PASS 1 0.181
test-add_observations.R add_observations add_observation works with custom NTIME_lookup PASS 1 0.169
test-add_observations.R add_observations add_observation handles debug mode correctly PASS 2 0.170
test-add_observations.R add_observations add_observation updates columns correctly PASS 1 0.159
test-add_observations.R add_observations add_observation handles include_day_in_ntime parameter PASS 1 0.232
test-add_observations.R add_observations add_observation handles missing NTIME gracefully PASS 3 0.107
test-add_observations.R add_observations add_observation handles DV field properly PASS 2 0.447
test-add_observations.R add_observations add_observation handles subject filtering PASS 1 0.103
test-add_observations.R add_observations add_observation can handle non-existent domain gracefully PASS 1 0.123
test-add_observations.R add_observations add_observation handles observations without matching administrations PASS 2 0.236
test-add_observations.R add_observations add_observation properly handles custom testcd field PASS 1 0.103
test-add_observations.R add_observations add_observation handles na.rm parameter when resolving duplicates PASS 2 0.140
test-add_parent_mapping.R add_parent_mapping add_parent_mapping adds correct parent mapping PASS 4 0.006
test-add_parent_mapping.R add_parent_mapping add_parent_mapping can add multiple mappings PASS 3 0.006
test-add_parent_mapping.R add_parent_mapping add_parent_mapping preserves existing mappings PASS 3 0.005
test-add_parent_mapping.R add_parent_mapping add_parent_mapping validates input correctly PASS 5 0.019
test-add_parent_mapping.R add_parent_mapping add_parent_mapping handles vector inputs with warnings PASS 4 0.011
test-add_parent_mapping.R add_parent_mapping add_parent_mapping rejects NA values PASS 2 0.008
test-add_parent_mapping.R add_parent_mapping add_parent_mapping initializes parent_mapping when NULL PASS 3 0.005
test-add_parent_mapping.R add_parent_mapping add_parent_mapping properly trims whitespace PASS 2 0.003
test-add_tad.R add_tad add_tad works with basic input PASS 2 0.009
test-add_tad.R add_tad add_tad handles multiple administrations PASS 1 0.007
test-add_tad.R add_tad add_tad handles observations before first dose PASS 1 0.007
test-add_tad.R add_tad add_tad handles multiple parent compounds PASS 1 0.007
test-add_tad.R add_tad add_tad handles empty data frame PASS 2 0.003
test-add_tad.R add_tad add_tad handles missing required columns PASS 1 0.004
test-add_tad.R add_tad add_tad preserves original data PASS 2 0.008
test-add_tad.R add_tad add_tad handles NA values in TIME PASS 1 0.006
test-add_tad.R add_tad add_tad returns a nif object PASS 1 0.006
test-add_tafd.R add_tafd add_tafd works with basic input PASS 2 0.008
test-add_tafd.R add_tafd add_tafd handles observations before first dose PASS 1 0.006
test-add_tafd.R add_tafd add_tafd handles multiple administrations PASS 1 0.006
test-add_tafd.R add_tafd add_tafd handles multiple parent compounds PASS 1 0.006
test-add_tafd.R add_tafd add_tafd handles different first dose times PASS 1 0.016
test-add_tafd.R add_tafd add_tafd handles empty data frame PASS 2 0.004
test-add_tafd.R add_tafd add_tafd handles missing required columns PASS 1 0.004
test-add_tafd.R add_tafd add_tafd validates input is a nif object PASS 1 0.004
test-add_tafd.R add_tafd add_tafd preserves original data PASS 2 0.008
test-add_tafd.R add_tafd add_tafd validates numeric data types PASS 3 0.011
test-add_tafd.R add_tafd add_tafd handles data with no dosing events PASS 1 0.004
test-add_tafd.R add_tafd add_tafd returns a nif object PASS 1 0.007
test-add_tafd.R add_tafd add_tafd handles missing PARENT column by creating it PASS 2 0.010
test-add_tafd.R add_tafd add_tafd properly ungroups the result PASS 2 0.007
test-add_tafd.R add_tafd add_tafd handles NA values in TIME correctly PASS 2 0.007
test-add_tafd.R add_tafd add_tafd correctly handles NA values in ID column PASS 1 0.004
test-add_tafd.R add_tafd add_tafd respects parent grouping with mixed dosing times PASS 1 0.007
test-add_tafd.R add_tafd add_tafd works with CMT column but no PARENT column PASS 2 0.010
test-ae_summary.R ae_summary ae_summary handles basic case correctly PASS 5 0.008
test-ae_summary.R ae_summary ae_summary works with different levels PASS 3 0.009
test-ae_summary.R ae_summary ae_summary handles show_cd parameter PASS 2 0.005
test-ae_summary.R ae_summary ae_summary handles grouping PASS 2 0.006
test-ae_summary.R ae_summary ae_summary handles ordering PASS 1 0.004
test-ae_summary.R ae_summary ae_summary handles filtering PASS 2 0.006
test-ae_summary.R ae_summary ae_summary handles invalid inputs PASS 2 0.008
test-ae_summary.R ae_summary ae_summary handles empty data PASS 2 0.004
test-ae_summary.R ae_summary ae_summary validates SDTM object structure PASS 5 0.017
test-calculate_bmi.R calculate_bmi calculate_bmi works correctly for valid inputs PASS 3 0.004
test-calculate_bmi.R calculate_bmi calculate_bmi handles NA values correctly PASS 5 0.005
test-calculate_bmi.R calculate_bmi calculate_bmi handles invalid inputs correctly PASS 4 0.004
test-calculate_bmi.R calculate_bmi calculate_bmi handles type errors correctly PASS 2 0.007
test-calculate_bmi.R calculate_bmi calculate_bmi handles length mismatch correctly PASS 1 0.003
test-df_to_string.R df_to_string df_to_string basic functionality works PASS 6 0.008
test-df_to_string.R df_to_string df_to_string handles empty data frames PASS 2 0.003
test-df_to_string.R df_to_string df_to_string respects n parameter PASS 1 0.003
test-df_to_string.R df_to_string df_to_string handles color formatting PASS 2 0.003
test-df_to_string.R df_to_string df_to_string handles NA values PASS 1 0.002
test-df_to_string.R df_to_string df_to_string maintains column alignment PASS 1 0.003
test-domain.R domain domain() returns correct data frames for existing domains PASS 2 0.003
test-domain.R domain domain() errors for non-existent domains PASS 3 0.019
test-domain.R domain domain() is case-insensitive PASS 4 0.004
test-domain.R domain domain() handles input validation correctly PASS 5 0.016
test-domain.R domain domain() rejects vectors with multiple names PASS 2 0.007
test-edish_plot.R edish_plot edish_plot handles valid input correctly PASS 3 0.085
test-edish_plot.R edish_plot edish_plot validates enzyme parameter PASS 1 0.007
test-edish_plot.R edish_plot edish_plot handles missing required lab tests PASS 1 0.007
test-edish_plot.R edish_plot edish_plot handles zero ULN values PASS 1 0.007
test-ensure_analyte.R ensure_analyte ensure_analyte creates ANALYTE from CMT when missing PASS 2 0.003
test-ensure_analyte.R ensure_analyte ensure_analyte preserves existing ANALYTE values PASS 1 0.002
test-ensure_analyte.R ensure_analyte ensure_analyte handles NA values in CMT PASS 3 0.005
test-ensure_analyte.R ensure_analyte ensure_analyte handles non-numeric CMT values PASS 1 0.003
test-ensure_analyte.R ensure_analyte ensure_analyte returns NIF object PASS 2 0.003
test-ensure_analyte.R ensure_analyte ensure_analyte errors on non-NIF input PASS 1 0.004
test-ensure_analyte.R ensure_analyte ensure_analyte errors when CMT is missing PASS 1 0.005
test-ensure_analyte.R ensure_analyte ensure_analyte handles empty data frame PASS 3 0.005
test-ensure_analyte.R ensure_analyte ensure_analyte preserves other columns PASS 3 0.004
test-ensure_dose.R ensure_dose ensure_dose creates DOSE field correctly PASS 3 0.007
test-ensure_dose.R ensure_dose ensure_dose handles existing DOSE field PASS 1 0.002
test-ensure_dose.R ensure_dose ensure_dose handles multiple doses per subject PASS 1 0.006
test-ensure_dose.R ensure_dose ensure_dose handles NA values correctly PASS 1 0.005
test-ensure_dose.R ensure_dose ensure_dose handles empty data frame PASS 2 0.003
test-ensure_dose.R ensure_dose ensure_dose handles missing required columns PASS 1 0.004
test-ensure_dose.R ensure_dose ensure_dose handles non-NIF input PASS 1 0.003
test-ensure_dose.R ensure_dose ensure_dose handles unsorted data correctly PASS 1 0.014
test-ensure_dose.R ensure_dose ensure_dose handles zero doses correctly PASS 1 0.005
test-ensure_parent.R ensure_parent ensure_parent() works correctly PASS 11 0.029
test-ensure_tad.R ensure_tad ensure_tad works with basic input PASS 2 0.009
test-ensure_tad.R ensure_tad ensure_tad handles multiple administrations PASS 1 0.007
test-ensure_tad.R ensure_tad ensure_tad handles observations before first dose PASS 1 0.007
test-ensure_tad.R ensure_tad ensure_tad handles multiple parent compounds PASS 1 0.007
test-ensure_tad.R ensure_tad ensure_tad handles empty data frame PASS 3 0.008
test-ensure_tad.R ensure_tad ensure_tad handles missing required columns PASS 1 0.005
test-ensure_tad.R ensure_tad ensure_tad preserves original data PASS 2 0.009
test-ensure_tad.R ensure_tad ensure_tad handles NA values in TIME PASS 1 0.007
test-ensure_tad.R ensure_tad ensure_tad returns a nif object PASS 1 0.007
test-ensure_tad.R ensure_tad ensure_tad handles non-nif input PASS 1 0.005
test-ensure_tad.R ensure_tad ensure_tad handles existing TAD column PASS 1 0.002
test-ensure_tafd.R ensure_tafd ensure_tafd works with basic input PASS 2 0.008
test-ensure_tafd.R ensure_tafd ensure_tafd handles multiple administrations PASS 1 0.007
test-ensure_tafd.R ensure_tafd ensure_tafd handles observations before first dose PASS 1 0.007
test-ensure_tafd.R ensure_tafd ensure_tafd handles multiple parent compounds PASS 1 0.007
test-ensure_tafd.R ensure_tafd ensure_tafd handles missing required columns PASS 1 0.005
test-ensure_tafd.R ensure_tafd ensure_tafd preserves original data PASS 2 0.008
test-ensure_tafd.R ensure_tafd ensure_tafd handles NA values in TIME PASS 2 0.007
test-ensure_tafd.R ensure_tafd ensure_tafd returns a nif object PASS 1 0.006
test-ensure_tafd.R ensure_tafd ensure_tafd handles non-nif input PASS 1 0.005
test-ensure_tafd.R ensure_tafd ensure_tafd handles existing TAFD column PASS 1 0.002
test-ensure_tafd.R ensure_tafd ensure_tafd handles non-numeric ID values PASS 1 0.004
test-ensure_tafd.R ensure_tafd ensure_tafd handles non-numeric EVID values PASS 1 0.004
test-ensure_tafd.R ensure_tafd ensure_tafd handles NA values in ID PASS 1 0.004
test-ensure_tafd.R ensure_tafd ensure_tafd handles no dosing events PASS 1 0.004
test-ensure_tafd.R ensure_tafd ensure_tafd handles different first dose times PASS 1 0.006
test-ensure_time.R ensure_time ensure_time works with TIME, TAD, and TAFD already present PASS 1 0.002
test-ensure_time.R ensure_time ensure_time calculates TIME, TAD, and TAFD from DTC PASS 4 0.013
test-ensure_time.R ensure_time ensure_time calculates TIME, TAD, and TAFD from TIME PASS 3 0.021
test-ensure_time.R ensure_time ensure_time handles multiple dosing events PASS 3 0.012
test-ensure_time.R ensure_time ensure_time handles multiple parent compounds PASS 3 0.010
test-ensure_time.R ensure_time ensure_time handles observations before first dose PASS 3 0.013
test-ensure_time.R ensure_time ensure_time handles missing required columns PASS 1 0.005
test-ensure_time.R ensure_time ensure_time preserves original data PASS 3 0.013
test-ensure_time.R ensure_time ensure_time returns a nif object PASS 1 0.010
test-find_duplicates.R find_duplicates find_duplicates works with default fields PASS 5 0.008
test-find_duplicates.R find_duplicates find_duplicates works with custom fields PASS 3 0.006
test-find_duplicates.R find_duplicates find_duplicates returns count only when requested PASS 1 0.003
test-find_duplicates.R find_duplicates find_duplicates returns NULL when no duplicates exist PASS 1 0.003
test-find_duplicates.R find_duplicates find_duplicates works with return_all_cols = FALSE PASS 4 0.007
test-find_duplicates.R find_duplicates find_duplicates handles missing fields PASS 1 0.004
test-find_duplicates.R find_duplicates find_duplicates handles NA values PASS 3 0.007
test-find_duplicates.R find_duplicates find_duplicates handles empty data frame PASS 1 0.004
test-ggplot_extension.R ggplot_extension multiplication works PASS 1 0.002
test-guess_ntime.R guess_ntime guess_ntime correctly parses various time formats PASS 3 0.007
test-guess_ntime.R guess_ntime guess_ntime handles ISO 8601 dates with a warning PASS 5 0.011
test-guess_ntime.R guess_ntime guess_ntime errors on missing PC domain PASS 1 0.004
test-guess_ntime.R guess_ntime guess_ntime errors on missing PCTPT column PASS 1 0.004
test-guess_ntime.R guess_ntime guess_ntime handles additional predose variations PASS 4 0.006
test-guess_parent.R guess_parent guess_parent identifies analyte with most administrations PASS 1 0.003
test-guess_parent.R guess_parent guess_parent falls back to observations when no administrations exist PASS 1 0.005
test-guess_parent.R guess_parent guess_parent ignores metabolite observations PASS 1 0.005
test-guess_parent.R guess_parent guess_parent prioritizes administrations over observations PASS 1 0.003
test-guess_parent.R guess_parent guess_parent returns NULL for empty dataset PASS 1 0.005
test-guess_parent.R guess_parent guess_parent works with minimal dataset PASS 1 0.003
test-guess_parent.R guess_parent guess_parent handles tied administration counts PASS 1 0.003
test-guess_parent.R guess_parent guess_parent works with ensure_analyte PASS 1 0.004
test-guess_parent.R guess_parent guess_parent returns NULL for dataset with only metabolite observations PASS 1 0.005
test-guess_parent.R guess_parent guess_parent handles NA values in key columns PASS 1 0.004
test-guess_parent.R guess_parent guess_parent correctly counts tied observations when no administrations exist PASS 1 0.005
test-guess_pcspec.R guess_pcspec guess_pcspec works correctly PASS 8 0.012
test-guess_pcspec.R guess_pcspec guess_pcspec handles errors correctly PASS 5 0.026
test-guess_pcspec.R guess_pcspec guess_pcspec maintains data frame attributes PASS 2 0.002
test-has_domain.R has_domain has_domain correctly identifies existing domains PASS 6 0.006
test-has_domain.R has_domain has_domain is case-insensitive PASS 4 0.004
test-has_domain.R has_domain has_domain handles input validation correctly PASS 5 0.017
test-has_domain.R has_domain has_domain handles multiple domain names correctly PASS 5 0.006
test-has_domain.R has_domain domain() rejects vectors with multiple names PASS 1 0.004
test-has_domain.R has_domain has_domain works with example data PASS 1 0.004
test-has_domain.R has_domain domain function behaviors PASS 3 0.002
test-import_from_connection.R import_from_connection import_from_connection handles CSV data correctly PASS 6 0.009
test-import_from_connection.R import_from_connection import_from_connection handles fixed-width data correctly PASS 6 0.008
test-import_from_connection.R import_from_connection import_from_connection auto-detects CSV format PASS 2 0.005
test-import_from_connection.R import_from_connection import_from_connection auto-detects fixed-width format PASS 2 0.005
test-import_from_connection.R import_from_connection import_from_connection ignores comments and empty lines PASS 2 0.005
test-import_from_connection.R import_from_connection import_from_connection handles datetime conversion PASS 3 0.005
test-import_from_connection.R import_from_connection import_from_connection handles custom delimiters PASS 3 0.005
test-import_from_connection.R import_from_connection import_from_connection adds missing fields PASS 3 0.005
test-import_from_connection.R import_from_connection import_from_connection respects no_numeric parameter PASS 3 0.004
test-import_from_connection.R import_from_connection import_from_connection handles errors correctly PASS 3 0.012
test-import_from_connection.R import_from_connection import_from_connection detects invalid fixed-width format PASS 1 0.005
test-import_from_connection.R import_from_connection import_from_connection detects inconsistent CSV format PASS 1 0.004
test-import_nif.R import_nif import_nif loads CSV files correctly PASS 6 0.010
test-import_nif.R import_nif import_nif loads fixed-width files correctly PASS 6 0.008
test-import_nif.R import_nif import_nif automatically detects CSV format PASS 2 0.004
test-import_nif.R import_nif import_nif automatically detects fixed-width format PASS 2 0.004
test-import_nif.R import_nif import_nif handles custom delimiter PASS 2 0.004
test-import_nif.R import_nif import_nif handles no_numeric parameter correctly PASS 2 0.006
test-import_nif.R import_nif import_nif handles date/time conversion PASS 2 0.004
test-import_nif.R import_nif import_nif handles comments and empty lines PASS 2 0.005
test-import_nif.R import_nif import_nif errors on file not found PASS 1 0.004
test-import_observation.R import_observation import_observation validates input parameters correctly PASS 4 0.023
test-import_observation.R import_observation import_observation correctly handles DTC field PASS 7 0.039
test-import_observation.R import_observation import_observation correctly handles NTIME field PASS 7 0.033
test-import_observation.R import_observation import_observation automatically assigns compartment when cmt is NULL PASS 2 0.027
test-import_observation.R import_observation import_observation automatically determines parent when parent is NULL PASS 4 0.052
test-import_observation.R import_observation import_observation correctly joins subject data PASS 4 0.029
test-import_observation.R import_observation import_observation correctly sets debug fields PASS 3 0.045
test-imputations.R imputations impute_admin_times_from_pcrftdtc works FAILED 1 0.056 🛑
test-imputations.R imputations impute_admin_times_from_pcrftdtc handles missing data FAILED 1 0.020 🛑
test-imputations.R imputations impute_admin_times_from_pcrftdtc handles date mismatches FAILED 1 0.018 🛑
test-imputations.R imputations impute_admin_times_from_pcrftdtc preserves existing times FAILED 2 0.052 🛑
test-impute_exendtc_to_cutoff.R impute_exendtc_to_cutoff impute_exendtc_to_cutoff works correctly ERROR 0 0.005
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc validates input correctly ERROR 1 0.011
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc adds IMPUTATION column if not present ERROR 0 0.007
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc performs imputations correctly ERROR 0 0.006
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc does not impute non-last administrations ERROR 0 0.006
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc handles multiple treatments per subject correctly ERROR 0 0.006
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc returns unmodified data when no imputations needed PASS 2 0.008
test-impute_exendtc_to_rfendtc.R impute_exendtc_to_rfendtc impute_exendtc_to_rfendtc handles case with no RFENDTC in DM PASS 2 0.008
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc validates input correctly ERROR 0 0.006
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc handles basic imputation correctly PASS 2 0.012
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc does not modify data when no imputations needed PASS 1 0.007
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc creates IMPUTATION column if missing ERROR 0 0.041
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc does not impute last administrations PASS 3 0.013
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc handles multiple subjects and treatments PASS 3 0.012
test-impute_missing_exendtc.R impute_missing_exendtc impute_missing_exendtc preserves existing data and columns PASS 4 0.013
test-lbm_boer.R lbm_boer lbm_boer calculates correct values for valid inputs PASS 6 0.008
test-lbm_boer.R lbm_boer lbm_boer handles NA inputs correctly PASS 7 0.010
test-lbm_boer.R lbm_boer lbm_boer handles invalid numeric inputs correctly PASS 6 0.013
test-lbm_boer.R lbm_boer lbm_boer handles invalid sex inputs correctly PASS 4 0.004
test-lbm_boer.R lbm_boer lbm_boer produces consistent results for same inputs PASS 3 0.004
test-lbm_hume.R lbm_hume lbm_hume calculates correct values for valid inputs PASS 4 0.006
test-lbm_hume.R lbm_hume lbm_hume handles edge cases correctly PASS 7 0.008
test-lbm_hume.R lbm_hume lbm_hume handles different sex input formats PASS 6 0.008
test-lbm_hume.R lbm_hume lbm_hume maintains consistency with other LBM formulas PASS 2 0.003
test-lbm_peters.R lbm_peters lbm_peters calculates lean body mass correctly PASS 4 0.005
test-lbm_peters.R lbm_peters lbm_peters handles edge cases PASS 9 0.009
test-lbm_peters.R lbm_peters lbm_peters handles vectorized inputs correctly PASS 4 0.004
test-make_administration.R make_administration make_administration works for examplinib_poc PASS 1 0.231
test-make_administration.R make_administration make_administration works without pc PASS 3 0.053
test-make_administration.R make_administration make_administration imputes missing last EXENDTC PASS 2 0.048
test-make_ae.R make_ae make_ae handles basic case correctly PASS 5 0.018
test-make_ae.R make_ae make_ae handles different ae_fields correctly PASS 4 0.032
test-make_ae.R make_ae make_ae handles filters correctly PASS 3 0.031
test-make_ae.R make_ae make_ae handles missing data correctly PASS 1 0.014
test-make_ae.R make_ae make_ae handles errors appropriately PASS 2 0.017
test-make_ae.R make_ae make_ae handles compartment and parent parameters correctly PASS 2 0.015
test-make_ae.R make_ae make_ae preserves specified columns with keep parameter PASS 2 0.015
test-make_nif.R make_nif date conversion works correctly PASS 1 0.004
test-make_nif.R make_nif impute_exendtc_to_rfendtc works as intended PASS 1 0.019
test-make_nif.R make_nif impute_exendtc_to_rfendtc works correctly PASS 3 0.015
test-make_nif.R make_nif impute_missing_exendtc PASS 1 0.009
test-make_nif.R make_nif impute_exendtc_to_cutoff works PASS 2 0.010
test-make_nif.R make_nif filter_EXSTDTC_after_EXENDTC works PASS 2 0.009
test-make_nif.R make_nif make_nif PASS 1 0.183
test-make_nif.R make_nif make_time PASS 1 0.010
test-make_nif.R make_nif add_administration, add_observation PASS 2 0.155
test-make_nif.R make_nif import_observation PASS 1 0.039
test-make_nif.R make_nif make_nif integration works PASS 1 0.414
test-make_nif.R make_nif guess_pcspec works PASS 3 0.004
test-make_nif.R make_nif guess_lbspec works PASS 2 0.003
test-make_nif.R make_nif add_time works PASS 1 0.005
test-make_nif.R make_nif limit works PASS 3 0.024
test-make_ntime.R make_ntime make_ntime returns lookup table for valid input PASS 4 0.007
test-make_ntime.R make_ntime make_ntime handles include_day parameter correctly PASS 2 0.008
test-make_ntime.R make_ntime make_ntime returns NULL when no ELTM field is present PASS 3 0.008
test-make_ntime.R make_ntime make_ntime handles missing DY column correctly PASS 2 0.009
test-make_ntime.R make_ntime make_ntime handles NA values correctly PASS 4 0.011
test-make_ntime.R make_ntime make_ntime correctly converts ISO 8601 formatted durations PASS 1 0.004
test-make_observation.R make_observation make_observation works PASS 1 0.019
test-make_observation.R make_observation make_observation issues warning if observation filter returns no observations PASS 1 0.018
test-make_observation.R make_observation make_observation works with coding table PASS 1 0.021
test-make_observation.R make_observation make_observation handles different domains correctly PASS 2 0.036
test-make_observation.R make_observation make_observation applies DV factor correctly PASS 2 0.036
test-make_observation.R make_observation make_observation handles custom DV_field correctly PASS 1 0.018
test-make_observation.R make_observation make_observation handles custom TESTCD_field correctly PASS 2 0.028
test-make_observation.R make_observation make_observation handles custom DTC_field correctly PASS 1 0.019
test-make_observation.R make_observation make_observation creates proper output fields PASS 13 0.031
test-make_observation.R make_observation make_observation handles NTIME lookup correctly PASS 1 0.017
test-make_observation.R make_observation make_observation validates inputs correctly PASS 2 0.009
test-make_observation.R make_observation make_observation handles missing DV field with coding table PASS 3 0.036
test-make_observation.R make_observation make_observation sets MDV correctly for missing values PASS 2 0.020
test-make_observation.R make_observation add_observation basic functionality works PASS 3 0.175
test-make_subjects_sdtm.R make_subjects_sdtm make_subjects_sdtm creates a proper subject data frame PASS 7 0.017
test-make_subjects_sdtm.R make_subjects_sdtm make_subjects_sdtm works with missing height/weight PASS 4 0.012
test-make_subjects_sdtm.R make_subjects_sdtm make_subjects_sdtm works with example data PASS 3 0.011
test-nca_from_pp.R nca_from_pp nca_from_pp works with valid inputs PASS 6 0.016
test-nca_from_pp.R nca_from_pp nca_from_pp handles missing analyte PASS 2 0.004
test-nca_from_pp.R nca_from_pp nca_from_pp handles errors appropriately PASS 4 0.015
test-nca_from_pp.R nca_from_pp nca_from_pp handles empty results PASS 1 0.008
test-nca_from_pp.R nca_from_pp nca_from_pp handles keep parameter correctly PASS 2 0.008
test-nca.R nca nca() input validation PASS 2 0.008
test-nca.R nca nca() analyte handling PASS 2 0.059
test-nca.R nca nca() grouping functionality PASS 6 0.082
test-nca.R nca nca() time handling PASS 2 0.046
test-nca.R nca nca() duplicate handling PASS 2 0.054
test-nca.R nca nca works with the whale data set PASS 1 0.096
test-nif_add_baseline.R nif_add_baseline multiplication works PASS 1 0.002
test-nif_administrations.R nif_administrations date_list works PASS 8 0.011
test-nif_administrations.R nif_administrations expand_ex works in general PASS 2 0.017
test-nif_administrations.R nif_administrations expand_ex works with TRTDY PASS 2 0.014
test-nif_administrations.R nif_administrations expand_ex works with missing EXENDTC PASS 2 0.013
test-nif_administrations.R nif_administrations expand_ex errs when end date before start date PASS 1 0.015
test-nif_administrations.R nif_administrations expand_ex errs when end day before start day PASS 1 0.015
test-nif_class.R nif_class new_nif works PASS 2 0.187
test-nif_class.R nif_class subject_info works PASS 2 0.021
test-nif_class.R nif_class subjects, usubjid works PASS 2 0.004
test-nif_class.R nif_class subjects works with minimal NIF PASS 4 0.010
test-nif_class.R nif_class parents works PASS 1 0.004
test-nif_class.R nif_class dose_red_sbs works PASS 1 0.010
test-nif_class.R nif_class rich_sampling_sbs works PASS 1 0.011
test-nif_class.R nif_class studies works PASS 1 0.002
test-nif_class.R nif_class ensure works PASS 8 0.051
test-nif_class.R nif_class doses works PASS 1 0.002
test-nif_class.R nif_class doses works with minimal NIF PASS 1 0.002
test-nif_class.R nif_class dose_levels works PASS 1 0.010
test-nif_class.R nif_class treatments works PASS 2 0.007
test-nif_class.R nif_class dose_levels works with minimal NIF PASS 1 0.010
test-nif_class.R nif_class analytes works PASS 1 0.002
test-nif_class.R nif_class analytes works with minimal NIF and rich NIF PASS 2 0.005
test-nif_class.R nif_class analyte_overview works PASS 2 0.018
test-nif_class.R nif_class cmt_mapping works PASS 2 0.006
test-nif_class.R nif_class index_dosing_interval works with single parent PASS 1 0.011
test-nif_class.R nif_class index_dosing_interval works with multiple parents PASS 3 0.016
test-nif_class.R nif_class n_administrations, max_admin_time works, max_observation_time PASS 4 0.029
test-nif_class.R nif_class guess analyte, guess_parent works PASS 2 0.008
test-nif_class.R nif_class add_dose_level works PASS 2 0.016
test-nif_class.R nif_class add_trtdy works PASS 1 0.006
test-nif_class.R nif_class index_rich_sampling_intervals works PASS 3 0.038
test-nif_class.R nif_class cfb works PASS 2 0.005
test-nif_class.R nif_class analyte_overview PASS 2 0.003
test-nif_class.R nif_class write_nif works PASS 2 0.097
test-nif_class.R nif_class print.nif works PASS 1 0.007
test-nif_class.R nif_class add_rtb works PASS 1 0.005
test-nif_exploration.R nif_exploration nif summary works PASS 2 0.087
test-nif_exploration.R nif_exploration nif_summary_plot works PASS 1 0.094
test-nif_exploration.R nif_exploration nif_plot_id PASS 5 0.106
test-nif_exploration.R nif_exploration dose_plot_id works PASS 2 0.034
test-nif_exploration.R nif_exploration covariate_hist works PASS 2 0.011
test-nif_exploration.R nif_exploration covariate_barplot works PASS 2 0.013
test-nif_exploration.R nif_exploration x_by_y works PASS 5 0.022
test-nif_exploration.R nif_exploration time_by_ntime works PASS 1 0.004
test-nif_exploration.R nif_exploration administration_summary works PASS 1 0.019
test-nif_exploration.R nif_exploration mean_dose_plot works PASS 1 0.010
test-nif_exploration.R nif_exploration subs_per_dose_level works PASS 1 0.013
test-nif_exploration.R nif_exploration obs_per_dose_level works PASS 1 0.011
test-nif_load.R nif_load is_char_datetime works correctly PASS 5 0.006
test-nif_load.R nif_load is_likely_datetime works as intended PASS 5 0.005
test-nif_load.R nif_load convert_char_datetime works correctly PASS 2 0.006
test-nif_load.R nif_load import from connection works PASS 1 0.003
test-nif_nca.R nif_nca nca_from_pp PASS 2 0.005
test-nif_options.R nif_options nif_disclaimer works PASS 1 0.001
test-nif_options.R nif_options nif_disclaimer works with custom text PASS 1 0.001
test-nif_options.R nif_options nif_option works PASS 5 0.011
test-nif_options.R nif_options nif_option_value works PASS 1 0.002
test-nif_options.R nif_options nif_option with empty arguments returns list PASS 1 0.001
test-nif_plot.R nif_plot make_plot_data_set PASS 1 0.029
test-nif_plot.R nif_plot plot.nif PASS 14 0.401
test-nif_subjects.R nif_subjects calculate_age calculates age correctly PASS 1 0.004
test-nif_subjects.R nif_subjects calculate_age preserves existing AGE values when not NA PASS 1 0.004
test-nif_subjects.R nif_subjects calculate_age overwrites existing AGE values when preserve_age = FALSE PASS 1 0.003
test-nif_subjects.R nif_subjects calculate_age uses custom reference date column PASS 1 0.003
test-nif_subjects.R nif_subjects calculate_age returns dataframe unchanged when required columns missing PASS 2 0.003
test-nif_subjects.R nif_subjects calculate_age handles non-dataframe input PASS 2 0.008
test-nif_subjects.R nif_subjects calculate_age rounds age correctly PASS 1 0.004
test-nif_subjects.R nif_subjects make subjects PASS 2 0.022
test-nif_subjects.R nif_subjects make_subject works with different age definitions PASS 2 0.015
test-nif_subjects.R nif_subjects make_subjects validates inputs correctly PASS 5 0.017
test-nif_subjects.R nif_subjects BMI calculation handles edge cases correctly PASS 7 0.016
test-nif_subjects.R nif_subjects make_subjects handles basic case correctly PASS 7 0.015
test-nif_subjects.R nif_subjects make_subjects handles VS data correctly PASS 6 0.020
test-nif_subjects.R nif_subjects make_subjects respects VSBLFL flag PASS 2 0.014
test-nif_subjects.R nif_subjects make_subjects respects custom subject filter PASS 4 0.018
test-nif_subjects.R nif_subjects make_subjects keeps specified columns PASS 2 0.010
test-nif_subjects.R nif_subjects make_subjects errors on invalid inputs PASS 4 0.018
test-nif_subjects.R nif_subjects make_subjects handles missing VS data gracefully PASS 3 0.016
test-nif_subjects.R nif_subjects make_subjects handles empty data frames PASS 4 0.011
test-nif_subjects.R nif_subjects SEX is properly recoded PASS 1 0.009
test-nif_subjects.R nif_subjects make_subjects issues warning for empty subject filter results PASS 2 0.016
test-physiological_calculations.R physiological_calculations BMI calculation handles edge cases correctly PASS 7 0.026
test-physiological_calculations.R physiological_calculations validate_lbw_parameters validates inputs correctly PASS 6 0.006
test-physiological_calculations.R physiological_calculations validate_lbw_parameters handles NA values correctly PASS 7 0.007
test-physiological_calculations.R physiological_calculations validate_lbw_parameters handles invalid numeric inputs correctly PASS 4 0.005
test-physiological_calculations.R physiological_calculations validate_lbw_parameters handles invalid sex values correctly PASS 4 0.005
test-physiological_calculations.R physiological_calculations validate_lbw_parameters handles vectorized inputs correctly PASS 4 0.005
test-physiological_calculations.R physiological_calculations validate_lbw_parameters handles length mismatches correctly PASS 3 0.011
test-physiological_calculations.R physiological_calculations validate_lbw_parameters handles non-numeric inputs correctly PASS 2 0.008
test-physiological_calculations.R physiological_calculations is_male correctly identifies male sex values PASS 4 0.005
test-physiological_calculations.R physiological_calculations is_male correctly identifies non-male sex values PASS 4 0.004
test-physiological_calculations.R physiological_calculations is_male handles NA values correctly PASS 1 0.001
test-physiological_calculations.R physiological_calculations is_male handles invalid sex values correctly PASS 5 0.005
test-resolve-duplicates.R resolve-duplicates resolve_duplicates works with default fields and mean function PASS 3 0.005
test-resolve-duplicates.R resolve-duplicates resolve_duplicates works with custom fields and sum function PASS 2 0.003
test-resolve-duplicates.R resolve-duplicates resolve_duplicates works with custom function to keep first value PASS 1 0.002
test-resolve-duplicates.R resolve-duplicates resolve_duplicates works with custom function to keep last value PASS 1 0.002
test-resolve-duplicates.R resolve-duplicates resolve_duplicates works with custom function to keep max value PASS 1 0.002
test-resolve-duplicates.R resolve-duplicates resolve_duplicates handles non-existent fields PASS 1 0.005
test-resolve-duplicates.R resolve-duplicates resolve_duplicates handles empty data frame PASS 2 0.004
test-resolve-duplicates.R resolve-duplicates resolve_duplicates handles data frame with no duplicates PASS 2 0.003
test-resolve-duplicates.R resolve-duplicates resolve_duplicates handles NA values PASS 2 0.003
test-resolve-duplicates.R resolve-duplicates resolve_duplicates works with different data types PASS 2 0.004
test-resolve-duplicates.R resolve-duplicates resolve_duplicates correctly handles NA values with na.rm=TRUE PASS 9 0.013
test-sdtm_analytics.R sdtm_analytics sdtm_missing_times works PASS 1 0.003
test-sdtm_class.R sdtm_class guess_ntime works PASS 2 0.008
test-sdtm_class.R sdtm_class new_sdtm PASS 1 0.001
test-sdtm_class.R sdtm_class sdtm summary PASS 3 0.013
test-sdtm_class.R sdtm_class sdtm_summary works with metabolite mapping PASS 1 0.003
test-sdtm_class.R sdtm_class suggest works with consider_nif_auto PASS 1 0.010
test-sdtm_class.R sdtm_class suggest_sdtm works PASS 1 0.008
test-sdtm_class.R sdtm_class suggest throws error when required domains are missing PASS 2 0.007
test-sdtm_class.R sdtm_class subject_info works PASS 1 0.002
test-sdtm_class.R sdtm_class subjects, analytes, treatments, doses works for sdtm PASS 4 0.002
test-sdtm_class.R sdtm_class filter_subject works PASS 2 0.005
test-sdtm_class.R sdtm_class derive_sld works PASS 1 0.004
test-sdtm_class.R sdtm_class derive_sld works with TR containing TRTEST PASS 1 0.004
test-sdtm_class.R sdtm_class derive_sld works with multiple diagnostic methods PASS 1 0.004
test-sdtm_class.R sdtm_class guess_ntime warns about ISO 8601 date formats PASS 7 0.012
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format works PASS 1 0.004
test-sdtm_exploration.R sdtm_exploration check_date_format, check_date_time_format works PASS 3 0.257
test-sdtm_exploration.R sdtm_exploration check_last_exendtc works PASS 1 0.008
test-sdtm_exploration.R sdtm_exploration check_sdtm works PASS 1 0.191
test-sdtm_exploration.R sdtm_exploration plot.sdtm works PASS 6 0.046
test-sdtm_exploration.R sdtm_exploration disposition_summary works PASS 1 0.004
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format handles valid ISO 8601 dates correctly PASS 2 0.003
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format filters out invalid date formats PASS 3 0.008
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format handles empty strings and NA values PASS 3 0.004
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format provides correct verbose output PASS 1 0.006
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format handles silent parameter correctly PASS 2 0.009
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format validates input correctly PASS 2 0.009
test-sdtm_exploration.R sdtm_exploration filter_correct_date_format handles multiple DTC columns correctly PASS 3 0.008
test-sdtm_exploration.R sdtm_exploration check_missing_time handles valid inputs correctly PASS 2 0.018
test-sdtm_exploration.R sdtm_exploration check_missing_time handles invalid inputs correctly PASS 2 0.007
test-sdtm_exploration.R sdtm_exploration check_missing_time handles empty dataframes correctly PASS 1 0.004
test-sdtm_exploration.R sdtm_exploration check_missing_time handles different date formats correctly PASS 1 0.006
test-sdtm_exploration.R sdtm_exploration check_missing_time preserves input data PASS 1 0.003
test-sdtm_exploration.R sdtm_exploration check_missing_time handles multiple DTC columns correctly PASS 1 0.006
test-sdtm_exploration.R sdtm_exploration check_missing_time handles missing DOMAIN column PASS 1 0.006
test-sdtm_load.R sdtm_load read_sdtm validates inputs correctly PASS 4 0.014
test-sdtm_load.R sdtm_load read_sdtm handles missing files correctly PASS 1 0.004
test-sdtm_load.R sdtm_load read_sdtm reads different formats correctly PASS 8 0.018
test-sdtm_load.R sdtm_load read_sdtm handles multiple domains correctly PASS 4 0.017
test-sdtm_load.R sdtm_load read_sdtm handles custom delimiters for CSV PASS 2 0.004
test-sdtm_load.R sdtm_load read_sdtm passes additional parameters to read functions PASS 2 0.003
test-sdtm_synthesis.R sdtm_synthesis synthesize_crea works PASS 1 0.224
test-sdtm_synthesis.R sdtm_synthesis EGFR is age-dependent PASS 1 0.229
test-summary-nif.R summary-nif summary.nif returns the correct class and structure PASS 5 0.054
test-summary-nif.R summary-nif summary.nif handles empty dataframes gracefully PASS 5 0.006
test-summary-nif.R summary-nif summary.nif errors appropriately with missing required columns PASS 1 0.005
test-summary-nif.R summary-nif summary.nif calculates sex distribution correctly PASS 4 0.045
test-summary-nif.R summary-nif summary.nif handles missing sex data correctly PASS 5 0.048
test-summary-nif.R summary-nif summary.nif handles renal function classification correctly PASS 4 0.044
test-summary-nif.R summary-nif summary.nif handles missing renal function data correctly PASS 2 0.049
test-summary-nif.R summary-nif summary.nif handles hepatic function classification correctly PASS 4 0.047
test-summary-nif.R summary-nif summary.nif correctly counts subjects per dose level PASS 2 0.054
test-summary-nif.R summary-nif summary.nif correctly calculates administration duration PASS 3 0.060
test-summary-nif.R summary-nif plot.summary_nif produces plots PASS 12 0.143
test-summary-nif.R summary-nif plot.summary_nif handles weight correctly PASS 2 0.068
test-summary-sdtm.R summary-sdtm summary.sdtm handles valid SDTM objects correctly PASS 10 0.016
test-summary-sdtm.R summary-sdtm summary.sdtm handles missing domains gracefully PASS 5 0.007
test-summary-sdtm.R summary-sdtm summary.sdtm handles missing fields in domains PASS 6 0.008
test-summary-sdtm.R summary-sdtm summary.sdtm correctly processes pc_timepoints PASS 5 0.005
test-summary-sdtm.R summary-sdtm summary.sdtm handles empty data frames PASS 6 0.008
test-summary-sdtm.R summary-sdtm summary.sdtm handles NA values in fields PASS 1 0.003
test-summary-sdtm.R summary-sdtm summary.sdtm handles multiple unique values appropriately PASS 6 0.022
test-summary-sdtm.R summary-sdtm summary.sdtm handles objects with complete mapping data PASS 7 0.017
test-utilities.R utilities conditional message works PASS 2 0.005
test-utilities.R utilities recode sex works PASS 1 0.002
test-utilities.R utilities positive_or_zero works PASS 3 0.004
test-utilities.R utilities indent_string works PASS 3 0.004
test-utilities.R utilities standardize_date_format works PASS 2 0.003
test-utilities.R utilities isofy_date_format works PASS 1 0.004
test-utilities.R utilities lubrify_dates works PASS 2 0.002
test-utilities.R utilities isofy_dates works PASS 2 0.003
test-utilities.R utilities is_iso_datetime works PASS 1 0.002
test-utilities.R utilities is_iso_date works PASS 1 0.002
test-utilities.R utilities pt_to_hours works PASS 1 0.003
test-utilities.R utilities compose_dtc works PASS 1 0.002
test-utilities.R utilities decompose_dtc works PASS 1 0.003
test-utilities.R utilities extract_date works PASS 1 0.003
test-utilities.R utilities extract_time works PASS 1 0.003
test-utilities.R utilities has time works PASS 4 0.006
test-utilities.R utilities nice enumeration works PASS 3 0.004
test-utilities.R utilities plural works PASS 4 0.004
test-utilities.R utilities safe_mean works PASS 3 0.004
test-utilities.R utilities safe_sd works PASS 3 0.004
test-utilities.R utilities safe min works PASS 4 0.005
test-utilities.R utilities pos_diff works PASS 2 0.004
test-utilities.R utilities trialday_to_day works PASS 5 0.008
test-utilities.R utilities is_iso8601_datetime correctly identifies ISO 8601 date-time formats PASS 25 0.032
test-utilities.R utilities is_iso8601_datetime works with vectors PASS 1 0.002
test-utilities.R utilities is_iso8601_date correctly identifies ISO 8601 date formats PASS 21 0.025
test-utilities.R utilities is_iso8601_date works with vectors PASS 2 0.003
test-validate_domain.R validate_domain validate_domain accepts valid domain PASS 1 0.004
test-validate_domain.R validate_domain validate_domain rejects non-data frame input PASS 2 0.007
test-validate_domain.R validate_domain validate_domain requires DOMAIN column PASS 1 0.004
test-validate_domain.R validate_domain validate_domain rejects empty DOMAIN column PASS 1 0.003
test-validate_domain.R validate_domain validate_domain handles multiple DOMAIN values PASS 2 0.007
test-validate_domain.R validate_domain validate_domain warns about missing expected columns PASS 3 0.010
test-validate_domain.R validate_domain validate_domain warns about missing permitted columns PASS 3 0.021
test-validate_domain.R validate_domain validate_domain handles unknown domains gracefully PASS 1 0.004
test-validate_domain.R validate_domain validate_domain handles correctly case sensitivity PASS 1 0.003
test-validate_domain.R validate_domain validate_domain works with example data PASS 1 0.003
test-validate_sdtm.R validate_sdtm validate_sdtm validates all domains in a valid SDTM object PASS 2 0.004
test-validate_sdtm.R validate_sdtm validate_sdtm shows/suppresses messages based on silent parameter PASS 1 0.003
test-validate_sdtm.R validate_sdtm validate_sdtm handles mixed valid and unknown domains PASS 1 0.005
test-viewer.R viewer multiplication works PASS 1 0.001
test-write_nif.R write_nif write_nif basic functionality works PASS 6 0.016
test-write_nif.R write_nif write_nif handles fixed-width format PASS 2 0.007
test-write_nif.R write_nif write_nif handles empty dataframe PASS 2 0.008
test-write_nif.R write_nif write_nif preserves column order PASS 1 0.005
Failed Warning Skipped
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Session Info
Field Value
Version R version 4.4.3 (2025-02-28)
Platform aarch64-apple-darwin20
Running macOS Sequoia 15.4
Language en_US
Timezone Europe/Berlin
Package Version
testthat 3.2.1.1
covr 3.6.4
covrpage 0.2